Our software
Databases
NCBI (Protein and DNA Sequences)
Uniprot (Protein)
Human Protein Reference Database (Protein)
Gene cards
Proteinatlas: Protein expression data
Phosphosite plus: Protein modification
PDB (Protein Structures)
SCOP (Protein Structure Architecture)
BioCyc (Metabolic Pathways, Maps and Data bases)
Biochemical Pathways (Metabolic Pathways, Maps and Data bases)
UCSC Genombrowser
ENCODE Projekt im UCSC Browser
SGD (Yeast genome data base)
COSMIC: Data base about somatic mutations in cancer
NDB (Nucleic Acids Structures)
tRNA data base
Modomics: RNA modification data base
Programs and Tools
ClustalW (Program for preparation of Multiple Sequence alignments)
GeneDoc (Visualisation and Editing of Multiple Sequence Alignments)
BioEdit (Visualisation and Editing of Multiple Sequence Alignments)
Pylip (Calculation and display of phylogenetic trees)
MEGA: Molecular Evolutionary Genetics Analysis (Visualisation of Phylogenetic Trees)
Swiss PBD viewer (very powerful but not so easy)
Chimera Structure viewer (cool)
RasMol Structure viewer (very easy to use)
Chromas (Display of Chromatogram Files from DNA Sequencing Machines)
Pro Origami Protein Structure Cartoons
Analysis and Prediction
BLAST (Protein and DNA sequence alignment and search)
ClustalW (Multiple Sequence alignments)
jpred2 (Protein Secondary structure prediction)
PredictProtein (Protein Secondary structure prediction)
Swiss-Model (Protein Structure Prediction)
PSort (Prediction of cellular localisation)
TargetP (Prediction of cellular localisation)
Promoter 2.0 Prediction Server
GeneMark (Gene Prediction)
ORF-Finder